Just to add another opinion........I'd definately go for hard wired bays, the extra effort is well worth it in the long run. Besides, if you put a lot of thought into the layout, and are able to normalise your typical working setup, you should be able to get by without having to use patch leads in a lot of cases.
Secondly, I would suggest you go with 1/4 inch jacks & sockets, and make your own patchleads (assuming you're handy with a soldering iron

. This is far cheaper than using bantom type bays....Switchcraft, Rean etc etc 96 way bays are very expensive, as are good quality tt patchleads.
If you like I can Email you some photos of my recently finished patchbay, plus I've got an M$ Excel template that I used to do the actual patchbay layout, and labels.
Regards......Dave