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Yes, I have this in Mod 3, also I remember back it was the same problem with the modulated X/Y Flexor module.
It always keeps the last state you have left it throughout all preset changes. This is not good when you have a resonance value tied to a x/y and the sound / filter changes with a new preset, my monitors jumped from the desk and my ears are dead for minutes, damn.

Can somebody confirm this, is it a problem in mod 4 too?

if you mean x/yFade&Control, x/yPan&Control or x/yControl: no preset problems here (tested with Modular2 and III)

Strange, I mean the Mod III x/y Pan and Control. Thank you for testing.
Also interesting, this module is in a mod IV skin but I've only installed mod 2 and 3.
But whatever skin I had this problem back on my Pulasr carda too, the dot stays where I left it and don't change with a preset change.